For article abstracts, article information, or open access links, click on the links at the end of the article.
Authors from the Geaux Viral Lab are underlined.
You can also click HERE to visit the Google Scholar Page for Dr. Jennifer R. Brum.
2021
Jurgensen SK, S Roux, SM Schwenck, FJ Stewart, MB Sullivan, JR Brum. (2021) Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state. The ISME Journal. [Link – Open Access]
Long AM, SK Jurgensen, AR Petchel, ER Savoie, JR Brum. (2021) Microbial ecology of oxygen minimum zones amidst ocean deoxygenation. Frontiers Microbiology 12:748961 [Link – Open Access]
2020
Nayfach S, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, D Paez-Espino, I-M Chen, M Huntemann, K Palaniappan, J Ladau, S Mukherjee, TBK Reddy, T Nielsen, E Kirton, JP Faria, JN Edirisinghe, CS Henry, SP Jungbluth, D Chivian, P Dehal, EM Wood-Charlson, AP Arkin, S Tringe, A Visel, IMG/M Data Consortium (including JR Brum), T Woyke, NJ Mouncey, NN Ivanova, NC Kyrpides, EA Eloe-Fadrosh. (2020) A genomic catalog of Earth’s Microbiomes. Nature Biotechnology 39:499-509 [Link – Open Access]
2019
Caputi, L, Q Carradec, D Eveillard, A Kirilovsky, E Pelletier, JJ Pierella Karlusich, FRJ Vieira, E Villar, S Chaffron, S Malviya, E Scalco, SG Acinas, A Alberti, J-M Aury, A-S Benoiston, A Bertrand, T Biard, L Bittner, M Boccara, JR Brum, C Brunet, G Busseni, A Carratalà, H Claustre, LP Coelho, S Colin, S D’Aniello, C Da Silva, M Del Core, H Doré, S Gasparini, F Kokoszka, J‐L Jamet, C Lejeusne, C Lepoivre, M Lescot, G Lima-Mendez, F Lombard, J Lukeš, N Maillet, M‐A Madoui, E Martinez, MG Mazzocchi, MB Néou, J Paz‐Yepes, J Poulain, S Ramondenc, J‐B Romagnan, S Roux, DS Manta, R Sanges, S Speich, M Sprovieri, S Sunagawa, V Taillander, A Tanaka, L Tirichine, C Trottier, J Uitz, A Veluchamy, J Veselá, F Vincent, S Yau, S Kandels‐Lewis, S Searson, C Dimier, M Picheral, Tara Oceans Coordinators, P Bork, E Boss, C de Vargas, MJ Follows, N Grimsley, L Guidi, P Hingamp, E Karsenti, P Sordino, L Stemmann, MB Sullivan, A Tagliabue, A Zingone, L Garczarek, F d’Ortenzio, P Testor, F Not, MR d’Alcalà, P Wincker, C Bowler, D Iudicone. (2019) Community-level responses to iron availability in open ocean plankton ecosystems. Global Biogeochemical Cycles 33:391-419 [Link – Open Access]
Roux S, JR Brum. (2019) A viral reckoning: viruses emerge as essential manipulators of global ecosystems. Environmental Microbiology Reports 11:3-8 [LINK – Open Access]
2018
Emerson JB, S Roux, JR Brum, B Bolduc, BJ Woodcroft, H Jang, CM Singleton, LM Solden, AE Naas, JA Boyd, SB Hodgkins, RM Wilson, G Trubl, C Li, S Frolking, PB Pope, KC Wrighton, PM Crill, JP Chanton, SR Saleska, GW Tyson, VI Rich, MB Sullivan. (2018) Host-linked soil viral ecology along a permafrost thaw gradient. Nature Microbiology 3:870-880 [Link – Open Access]
Brum JR, MB Sullivan. (2018) Ecological genomics of marine viruses. p. 345-376, in JM Gasol, DL Kirchman [eds] Microbial Ecology of the Oceans, 3rd Edition, Wiley-Blackwell
2017
Weitz JS, SJ Beckett, JR Brum, BB Cael, J Dushoff. (2017) Lysis, lysogeny and virus-microbe ratios. Nature 549:E1 [Link]
Alberti A, J Poulain, S Engelen, K Labadie, S Romac, I Ferrera, G Albini, JM Aury, C Belser, A Bertrand, C Cruaud, C Da Silva, C Dossat, F Gavory, S Gas, J Guy, M Haquelle, E Jacoby, O Jaillon, A Lemainque, E Pelletier, G Samson, M Wessner, Genoscope Technical Team, SG Acinas, M Royo-Llonch, FM Cornejo-Castillo, R Logares, B Fernández-Gómez, C Bowler, G Cochrane, C Amid, P Ten Hoopen, C De Vargas, N Grimsley, E Desgranges, S Kandels-Lewis, H Ogata, N Poulton, ME Sieracki, R Stepanauskas, MB Sullivan, JR Brum, MB Duhaime, BT Poulos, BL Hurwitz, S Pesant, E Karsenti, P Wincker. (2017) Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition. Scientific Data 4:170093 [LINK – Open Access]
Vik DR, S Roux, JR Brum, B Bolduc, JB Emerson, CC Padilla, FJ Stewart, MB Sullivan. (2017) Putative archaeal viruses from the mesopelagic ocean. PeerJ 5:e3428 [LINK – Open Access]
2016
Roux S, JR Brum, BE Dutlih, S Sunagawa, MB Duhaime, A Loy, BT Poulos, N Solonenko, E Lara, J Poulain, S Pesant, S Kandels-Lewis, C Dimier, M Picheral, S Searson, C Cruaud, A Alberti, CM Duarte, JM Gasol, D Vaque, Tara Oceans Coordinators, P Bork, SG Acinas, P Wincker, MB Sullivan. (2016) Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses. Nature 537:689-693 [LINK]
Brum JR*, JC Ignacio-Espinoza*, E-H Kim*, G Trubl, R Jones, S Roux, NC VerBerkmoes, VI Rich, MB Sullivan. (2016) Illuminating structural proteins in viral ‘dark matter’ with metaproteomics. Proceedings of the National Academy of Sciences, U.S.A. 113:2436-2441 (*co-first authors) [LINK – Open Access]
Guidi L*, S Chaffron*, L Bittner*, D Eveillard*, A Larhlimi, S Roux, Y Darzi, S Audic, L Berline, JR Brum, LP Coelho, JC Ignacio Espinoza, S Malviya, S Sunagawa, C Dimier, S Kandels-Lewis, M Picheral, J Poulain, S Searson, Tara Oceans coordinators, L Stemmann, F Not, P Hingamp, S Speich, M Follows, L Karp-Boss, E Boss, H Ogata, S Pesant, J Weissenbach, P Wincker, SG Acinas, P Bork, C de Vargas, D Iudicone, MB Sullivan, J Raes, E Karsenti, C Bowler, G Gorsky. (2016) Plankton networks driving carbon export in the global ocean. Nature 532:465-470 (*co-first authors) [LINK]
Brum JR, BL Hurwitz, HW Ducklow, MB Sullivan. (2015) Seasonal time bombs: Dominant temperate viruses affect Southern Ocean microbial dynamics. The ISME Journal. 10:437-449 [LINK – Open Access]
2015
Goldsmith DB, JR Brum, M Hopkins, CA Carlson, M Breitbart. (2015) Water column stratification structures viral community composition in the Sargasso Sea. Applied and Environmental Microbiology 76:85-94 [LINK – Open Access]
Brum JR*, JC Ignacio-Espinoza*, S Roux*, G Doulcier, SG Acinas, A Alberti, S Chaffron, C Cruaud, C de Vargas, JM Gasol, G Gorsky, AC Gregory, L Guidi, P Hingamp, D Iudicone, F Not, H Ogata, S Pesant, BT Poulos, SM Schwenck, S Speich, C Dimier, S Kandels-Lewis, M Picheral, S Searson, Tara Oceans Coordinators, P Bork, C Bowler, S Sunagawa, P Wincker, E Karsenti, MB Sullivan. (2015) Patterns and ecological drivers of ocean viral communities. Science 348:1261498 (*co-first authors) [LINK]
Villar E, GK Farrant, M Follows, L Garczarek, S Speich, S Audic, L Bittner, B Blanke, JR Brum, C Brunet, R Casotti, A Chase, JR Dolan, F d’Ortenzio, JP Gattuso, N Grima, L Guidi, CN Hill, O Jahn, JL Jamet, H Le Goff, C Lepoivre, S Malviya, E Pelletier, JB Romagnan, S Roux, S Santini, E Scalco, SM Schwenck, A Tanaka, P Testor, T Vannier, F Vincent, A Zingone, C Dimier, M Picheral, S Searson, S Kandels-Lewis, Tara Oceans coordinators, SG Acinas, P Bork, E Boss, C de Vargas, G Gorsky, H Ogata, S Pesant, MB Sullivan, S Sunagawa, P Wincker, E Karsenti, C Bowler, F Not, P Hingamp, D Iudicone. (2015) Environmental characteristics of Agulhas rings affect interocean plankton transport. Science 348:1261447 [LINK]
Cunningham BR*, JR Brum*, SM Schwenck, MB Sullivan, SG John. (2015) An inexpensive, accurate, and precise wet-mount method for enumerating aquatic viruses. Applied and Environmental Microbiology 81:2995-3000 (*co-first authors) [LINK]
Brum JR, MB Sullivan. (2015) Rising to the challenge: Accelerated pace of discovery transforms marine virology. Nature Reviews Microbiology 13:147-159 [LINK]
Hurwitz BL, JR Brum, MB Sullivan. (2015) Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome. The ISME Journal 9:472-484 [LINK – Open Access]
2014
Hurwitz BL, A Westvald, JR Brum, MB Sullivan. (2014) Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses. Proceedings of the National Academy of Sciences, U.S.A. 111:10714-10719 [LINK – Open Access]
Brum JR, JJ Morris, M Decima, MR Stukel. (2014) Mortality in the oceans: causes and consequences. p. 16-48, in PF Kemp [ed] Eco-DĀS IX Symposium Proceedings, ASLO [LINK – Open Access]
2013
Brum JR, RO Schenck, MB Sullivan. (2013) Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses. The ISME Journal 7:1738-1751 [LINK – Open Access]
Brum JR, AI Culley, GF Steward. (2013) Assembly of a marine viral metagenome after physical fractionation. PLoS ONE 8(4):e60604 [LINK – Open Access]
2011
Brum JR, GF Steward. (2011) Physical fractionation of aquatic viral assemblages. Limnology and Oceanography: Methods 9:150-163 [LINK – Open Access]
John SG, CB Mendez, L Deng, B Poulos, AKM Kauffman, S Kern, J Brum, MF Polz, EA Boyle, MB Sullivan. (2011) A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environmental Microbiology Reports 3:195-202 [LINK – Open Access]
2010
Brum JR, GF Steward. (2010) Morphological characterization of viruses in the stratified water column of alkaline, hypersaline Mono Lake. Microbial Ecology 60:636-643 [LINK – Open Access]
2005
Brum JR, GF Steward, SC Jiang, R Jellison. (2005) Spatial and temporal variability of prokaryotes, viruses, and viral infections of prokaryotes in an alkaline, hypersaline lake. Aquatic Microbial Ecology 41:247-260 [LINK – Open Access]
Brum JR. (2005) Concentration, production, and turnover of viruses and dissolved DNA pools at Station ALOHA, North Pacific Subtropical Gyre. Aquatic Microbial Ecology 41:103-113 [LINK – Open Access]
2004
Brum JR, GF Steward, DM Karl. (2004) A novel method for the measurement of dissolved deoxyribonucleic acid in seawater. Limnology and Oceanography: Methods 2:248-255 [LINK – Open Access]
2002
Dore JE, JR Brum, LM Tupas, DM Karl. (2002) Seasonal and interannual variability in sources of nitrogen supporting export in the oligotrophic subtropical North Pacific Ocean. Limnology and Oceanography 47:1595-1607 [LINK – Open Access]
Geaux Viral Lab 